Bio Research

Skills (6)

• Skill instrument-data-to-allotrope

  Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV.

  Any agent

  npx skills add anthropics/knowledge-work-plugins --skill instrument-data-to-allotrope

• Skill nextflow-development

  Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA.

  Any agent

  npx skills add anthropics/knowledge-work-plugins --skill nextflow-development

• Skill scientific-problem-selection

  This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions.

  Any agent

  npx skills add anthropics/knowledge-work-plugins --skill scientific-problem-selection

• Skill scvi-tools

  Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3)…

  Any agent

  npx skills add anthropics/knowledge-work-plugins --skill scvi-tools

• Skill single-cell-rna-qc

  Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.

  Any agent

  npx skills add anthropics/knowledge-work-plugins --skill single-cell-rna-qc

• Skill start

  Set up your bio-research environment and explore available tools. Use when first getting oriented with the plugin, checking which literature, drug-discovery, or visualization MCP servers are…

  Any agent

  npx skills add anthropics/knowledge-work-plugins --skill start

From Anthropic's public plugin directory, read on 2026-10-15. Find a skill by task.